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Collection Genomics

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Resource Description Topic(s) Format Provider
An Introduction to NCBI Cloud Computing for Biologists A workshop covering how to use AWS services like Athena to mine metadata from the NCBI SRA database for dataset selection, perform sequence alignment analysis with MagicBlast, and visualize aligned data in the NCBI Genome Data Viewer browser application.
Data collection, Data reuse, Data analysis Workshop NCBI
Data publishing and archival These slides focus on topics such as discipline-specific repositories, generalist repositories, the FAIRDOM platform, and reproducible models in FAIRDOM.
Data planning Slides ELIXIR Luxembourg
Functional Genomics - Submitting data A tutorial covering the importance of data submission, metadata templates like MIAME and MINSEQE, submission timelines, and submission locations for functional genomics data (e.g. ArrayExpress and GEO). It also discusses secondary databases like Expression Atlas.
Data sharing Online tutorial EMBL-EBI
Introduction to exploring genome-phenome data with EGA A webinar offering an overview of EGA, discussing its controlled access data, the process for gaining access through the Data Access Committee, the use of DUO ontology for tagging data, and a live demo of pyEGA3 for downloading permitted data.
Data planning Webinar EMBL-EBI
Nucleotide sequencing data submission and retrieval at the ENA A webinar introducing the background of the European Nucleotide Archive (ENA), data and metadata models, submission and retrieval processes, submission methods, and tools for data download.
Data collection, Data reuse, Data sharing Webinar EMBL-EBI
Submitting your genome wide association study data to the GWAS Catalog A webinar offering a detailed guide on submitting data to the GWAS Catalog, including user account setup, data format conversion, metadata provision, and validation using a command-line tool, with an emphasis on explaining metadata columns.
Data sharing Webinar EMBL-EBI